Command line tools


The janggu app can be used to browse through the results of one or more models using webbrowser of your choice.

Example usage:

janggu -path <results-root> -port <PORT>


janggu-trim can be used to trim the interval starts and ends of a given BED/GFF file which is intended for creating the ROI by a specified factor.

Trimming might circumvent undesired round effects when using resolution>1 and store_whole_genome=True to handle covarage data with Cover. Therefore, we suggest to trim the ROIs that are used during training and evaluation beforehand. For the sake of convenience, we added the tool janggu-trim to do that.

Example usage:

janggu-trim input.bed trimmed.bed -divby 50