Command line tools¶
The janggu app can be used to browse through the results of one or more models using webbrowser of your choice.
janggu -path <results-root> -port <PORT>
janggu-trim can be used to trim the interval starts and ends of a given BED/GFF file which is intended for creating the ROI by a specified factor.
Trimming might circumvent undesired round effects when
to handle covarage data with
Therefore, we suggest to trim the ROIs that are used during
training and evaluation beforehand. For the sake of convenience,
we added the tool janggu-trim to do that.
janggu-trim input.bed trimmed.bed -divby 50