Janggu
v0.9.3
Janggu - Deep learning for Genomics
Tutorial
Genomic Datasets
Output directory configuration
Customize Evaluation
Command line tools
API
Contributing
Authors
Changelog
Janggu
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Contents
¶
Janggu - Deep learning for Genomics
Hallmarks of Janggu:
Why the name Janggu?
Tutorial
Part I) Introduction to Genomic Datasets
Part II) Building a neural network with Janggu
Part III) Evaluation and interpretation of the model
Genomic Datasets
General principle of the Genomics Datasets
Normalization
Granularity of the coverage
Caching
Dataset storage
Converting Numpy to Cover
Evaluation features
Rearranging channel dimensions
Wrapper Datasets
Different views datasets
Randomized dataset
Output directory configuration
Customize Evaluation
Score callable
Exporter callable
Custom example scorers
Command line tools
janggu
janggu-trim
API
janggu.data - Genomics datasets for deep learning
janggu - Utilities for creating, fitting and evaluating models
Performance score utilities
Decorators for network construction
Genomics-specific keras layers
Contributing
Bug reports
Documentation improvements
Feature requests and feedback
Development
Authors
Changelog
0.9.3 (2019-07-08)
0.9.2 (2019-05-04)
0.9.1 (2019-05-03)
0.9.0 (2019-03-20)
0.8.6 (2019-03-03)
0.8.5 (2019-01-09)
0.8.4 (2018-12-11)
0.8.3 (2018-12-05)
0.8.2 (2018-12-04)
0.8.1 (2018-12-03)
0.8.0 (2018-12-02)
0.7.0 (2018-12-01)
Indices and tables
¶
Index
Module Index
Search Page
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v: v0.9.3
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